Fermented Vegetables & Fruit

How to Ferment Tomatoes: Fermented Salsa Base and Whole Cherry Tomatoes

How to Ferment Tomatoes: Fermented Salsa Base and Whole Cherry Tomatoes

Learn to ferment tomatoes at home with this easy beginner guide. Create probiotic-rich salsa base, pasta sauce starter, and more.

At a glance

To ferment tomatoes, chop ripe tomatoes, toss them with 2% of their weight in salt (18 g per 900 g), pack them into a jar so they're under their own juice, and leave them loosely covered at 65–75°F (18–24°C) for 3–5 days. Whole cherry tomatoes can instead be poked and covered with a 3% brine for 7–14 days.

  • Chopped method: salt at 2% of the tomato weight – 18 g per 900 g.
  • Chopped tomatoes ferment in 3–5 days; whole cherry tomatoes in brine take 7–14 days.
  • Whole cherry tomatoes: poke them and use a 3% brine (15 g salt per 500 ml).
  • Keep everything under the liquid; a flat white film is usually kahm yeast, fuzzy growth is mold.
  • Great as a no-cook sauce or salsa base.

Ferment profile

Fermentation
Lactic acid
Main microbes
Naturally occurring lactic acid bacteria
Live cultures
Yes
Alcohol
None / trace

Recipe: Fermented Tomatoes (Salsa and Sauce Base)

Makes
About 1 litre (1 quart)
Hands-on
20 min
Fermentation
3–5 days at 65–75°F (18–24°C)
Salt
2% of the tomato weight (18 g per 900 g)
Temperature
65–75°F (18–24°C)
Difficulty
Easy

Equipment

  • 1-litre (1-quart) wide-mouth jar
  • Fermentation weight, small jar or brine-filled bag
  • Cloth or loose lid
  • Kitchen scale

Ingredients

  • 900 g (2 lb) ripe Roma or plum tomatoes (firm, unblemished)
  • 18 g non-iodized salt (2% of the tomato weight)
  • 4 garlic cloves (smashed; optional)
  • A handful fresh basil or 1 tsp dried oregano (optional)
  • ½ tsp red pepper flakes (optional)

Method

  1. Wash the tomatoes, core them and cut into quarters or chunks. Weigh them and calculate 2% of the weight in salt.
  2. Toss the tomatoes with the salt and any garlic and herbs, and leave for 15–20 minutes to draw out juice.
  3. Pack them into the jar, pressing down so they're covered by their own juice. Leave about 1½ inches (4 cm) at the top.
  4. Add a weight to keep them submerged and cover loosely.
  5. Leave at 65–75°F (18–24°C), out of direct sunlight. Press down once a day and skim any foam.
  6. Taste from day 3. When they're pleasantly tangy (usually 3–5 days), close the jar and refrigerate.

Fermented tomatoes are ripe tomatoes salted and left at room temperature for a few days, until they turn tangy, lightly fizzy and savory. There are two easy ways to do it: chopped tomatoes with 2% salt, which ferment in their own juice in 3–5 days and make a great salsa or sauce base; and whole cherry tomatoes in brine, which take a week or two and stay whole. Both are below, including the cherry tomato batch we made and photographed in 2016.

Method 1: Chopped Tomatoes (Salsa Base)

This is the recipe in the card above. The key is salt by weight: 2% of the tomatoes’ weight – 18 g for 900 g (2 lb). The salt pulls out the juice, the tomatoes sink into it, and lactic acid bacteria sour them in a few days. Firm, meaty tomatoes such as Roma or plum give a thicker result; juicy slicing tomatoes work but release more liquid.

To turn it into salsa: drain the fermented tomatoes (keep the liquid), chop them, and mix with diced onion, chili, chopped cilantro and lime juice, loosening with a little of the liquid. See also our fermented salsa.

Method 2: Whole Cherry Tomatoes in Brine

Poke each cherry tomato a few times with a toothpick so the brine can get in, layer them in a jar with garlic and basil, and cover with a 3% brine – 15 g of salt per 500 ml of water. Weigh them down, cover loosely and leave for 7–14 days. They stay whole and turn tangy inside, and the brine takes on the garlic and basil. Use them on salads and cheese boards or burst them over pasta.

What to Expect

  • Bubbles and cloudiness in the first few days – normal, and a sign fermentation has started.
  • Foam on chopped tomatoes – skim it off.
  • Softening – tomatoes soften more than harder vegetables; that’s why chopped tomatoes suit sauces.
  • Timing: chopped, 3–5 days; whole cherry tomatoes, 7–14 days, at 65–75°F (18–24°C). Warmer is faster.

Troubleshooting

  • White film: a flat, smooth film is usually kahm yeast. Skim it and keep the tomatoes submerged. Fuzzy or colored growth is mold: throw the batch away (NCHFP).
  • Tomatoes floating: weigh them down with a small jar or a brine-filled bag – anything above the liquid can mold.
  • Very mushy or slimy: too warm, too long or overripe tomatoes. If it smells rotten, discard it.
  • Not sour after 5 days (chopped): probably too cold – move it somewhere warmer.
  • Too salty: use the tomatoes in cooked sauces, where the salt counts as seasoning.

How to Use Fermented Tomatoes

  • A no-cook pasta sauce, blended with olive oil and basil.
  • A base for salsa, pizza sauce or gazpacho.
  • Stirred into soups and stews at the end of cooking.
  • The liquid in dressings, or in a Bloody Mary.

Cooking kills the live bacteria but keeps the flavor. Unripe fruit makes a different ferment – see fermented green tomatoes. More: fermented carrots, the best vegetables to ferment and how to store fermented foods.

From our kitchen

Our original fermented tomato recipe, first published here in 2016, used whole cherry tomatoes – a mix of red, orange and yellow, some still slightly green – with 2 handfuls of basil and 5 garlic cloves, in a brine of 2 tablespoons of salt and a pint of water.

We removed the stems, poked 3 holes in each tomato with a toothpick, sliced the garlic thinly, layered tomatoes, basil and garlic in a jar and poured the brine over to cover. A small jar pushed into the neck held everything down, with a cloth on top. We left them for 10–14 days; bubbles near the top and cloudy brine told us they were fermenting. When the jar ran low, we added more tomatoes and brine to the same jar.

What we’d change today: 2 tablespoons of salt in a pint of water works out at roughly 6% – saltier than needed – so we’d now use a 3% brine (15 g of salt per 500 ml). And rather than topping up an old jar indefinitely, we’d start each batch fresh with a few spoonfuls of the old brine.

Ingredients for fermented cherry tomatoes: a bowl of mixed red, orange and yellow cherry tomatoes, fresh basil, garlic, salt and an empty jar
Our 2016 ingredients: cherry tomatoes, basil, garlic and salt.
Mixed cherry tomatoes on a wooden board next to a toothpick
Each tomato poked with a toothpick.
Thinly sliced garlic on a wooden board
Garlic sliced thin.
A jar layered with yellow and red cherry tomatoes, basil leaves and garlic slices
Layered with basil and garlic.
Top view of cherry tomatoes and basil covered with brine in a jar
Brine poured over to cover.
A small jar pressed into the neck of a larger jar of cherry tomatoes to keep them under the brine
A smaller jar as the weight.
Top view of fermented cherry tomatoes with basil in cloudy brine
Cloudy brine after fermenting.
A lidded jar of finished fermented cherry tomatoes with basil and garlic
The finished jar.

Frequently asked questions

How much salt do I need to ferment tomatoes?

For chopped tomatoes, 2% of their weight – 18 g for 900 g. For whole cherry tomatoes in brine, a 3% brine: 15 g of salt per 500 ml of water.

How long do fermented tomatoes take?

Chopped tomatoes usually take 3–5 days at 65–75°F (18–24°C). Whole cherry tomatoes in brine take 7–14 days.

Why poke holes in cherry tomatoes?

The skins are fairly waterproof. Poking each tomato lets the brine in, so they ferment evenly instead of bursting later.

Can I ferment canned tomatoes?

Not in the usual way. Canned tomatoes have been heated, so the bacteria that start fermentation are gone. Use fresh tomatoes.

Why are my fermented tomatoes fizzy?

Fermentation bacteria make carbon dioxide. Light fizz is normal and fades once the jar is refrigerated.

Is the white film on my tomatoes safe?

A flat, smooth white film is usually kahm yeast; skim it off. Anything fuzzy or colored is mold, and the batch should be thrown away.

How long do fermented tomatoes last?

In the fridge, kept under their liquid, they keep for weeks to a couple of months, slowly softening and getting more sour. Discard them if they grow mold or smell rotten.

Can I use fermented tomatoes for pasta sauce?

Yes. Blend them with olive oil and basil for a no-cook sauce, or cook them into a sauce – cooking kills the live bacteria but keeps the flavor.

Sources

  1. National Center for Home Food Preservation. General information on fermenting. Link
  2. National Center for Home Food Preservation. Causes and possible solutions for problems with fermented pickles. Link
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